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OpenReadout

Changelog

All notable changes to this project are documented here. The format is based on Keep a Changelog and the project follows Semantic Versioning.

[Unreleased]

Added

  • A Codex plugin and marketplace (codex plugin marketplace add openreadout/agent-plugins) and a Gemini CLI extension (gemini extensions install https://github.com/openreadout/agent-plugins).

Changed

  • The Claude Code plugin, the Codex plugin and the Gemini CLI extension install from their own repository, openreadout/agent-plugins, which the release workflow updates. Add the Claude Code marketplace again with /plugin marketplace add openreadout/agent-plugins.
  • A privacy policy, PRIVACY.md, linked from the README, the docs site and the .mcpb manifest.

Fixed

  • The Claude Code plugin failed to load because its marketplace entry and plugin.json both declared the skill.
  • The Homebrew formula and winget manifests attached to a release no longer start with the template’s header comment.

[0.1.0] - 2026-10-02

The first public release.

Added

  • Readers for raw files from microscopes, screening systems, flow cytometers, electrophysiology rigs, NMR and optical spectrometers, mass spectrometers, chromatographs, plate readers, qPCR cyclers and other bench instruments. openreadout self formats lists them with their validation level.
  • Sixteen commands: info, check, preview, stats, trace, table, spectra, analyze, export, batch, link, index, search, watch, self and mcp.
  • JSON output on every command, with published JSON Schemas and documented exit codes.
  • Verified export to OME-TIFF, OME-Zarr, mzML, CSV, Parquet, Arrow, NWB, JCAMP-DX, Allotrope ASM and RDML.
  • Analyses of chromatograms, peaks, plate assays, qPCR, NMR spectra, patch-clamp recordings, extracellular spikes and flow-cytometry gates.
  • An MCP server, an agent skill and a Claude Code plugin.
  • A Python package with bioio and napari plugins, an R package, a WebAssembly build, and Nextflow, Galaxy and Snakemake integrations.
  • A documentation website: task recipes with real output, a searchable format list taken from self formats, a JSON reference rendered from the published schemas, and a browser demo.